4A3O Hydrolase date Oct 03, 2011
title Crystal Structure Of The Usp15 Dusp-Ubl Monomer
authors P.R.Elliott, H.Liu, M.W.Pastok, G.J.Grossmann, D.J.Rigden, M.J.Cl S.Urbe, I.L.Barsukov
compound source
Molecule: Ubiquitin Carboxyl-Terminal Hydrolase 15
Chain: A, B
Fragment: Dusp-Ubl, Residues 4-233
Synonym: Usp15 Dusp-Ubl, Deubiquitinating Enzyme 15, Ubiqui Thiolesterase 15, Ubiquitin-Specific-Processing Protease 1 Unph-2, Unph4;
Ec: 3.4.19.12
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 511693
Expression_system_strain: Bl21
symmetry Space Group: P 31
R_factor 0.2008 R_Free 0.2294
crystal
cell
length a length b length c angle alpha angle beta angle gamma
100.419 100.419 71.704 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.20 Å
ligand GOL enzyme Hydrolase E.C.3.4.19.12 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructural variability of the ubiquitin specific protease DUSP-UBL double domains., Elliott PR, Liu H, Pastok MW, Grossmann GJ, Rigden DJ, Clague MJ, Urbe S, Barsukov IL, FEBS Lett. 2011 Nov 4;585(21):3385-90. Epub 2011 Oct 10. PMID:22001210
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (80 Kb) [Save to disk]
  • Biological Unit Coordinates (4a3o.pdb1.gz) 39 Kb
  • Biological Unit Coordinates (4a3o.pdb2.gz) 38 Kb
  • LPC: Ligand-Protein Contacts for 4A3O
  • CSU: Contacts of Structural Units for 4A3O
  • Structure Factors (2334 Kb)
  • Retrieve 4A3O in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4A3O from S2C, [Save to disk]
  • Re-refined 4a3o structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4A3O in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4A3O
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4A3O, from MSDmotif at EBI
  • Fold representative 4a3o from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4a3o] [4a3o_B] [4a3o_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4A3O: [DUSP ] by SMART
  • Other resources with information on 4A3O
  • Community annotation for 4A3O at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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