4AF3	Transferase Inhibitor	date	Jan 16, 2012
title	Human Aurora B Kinase In Complex With Incenp And Vx-680
authors	J.M.Elkins, M.Vollmar, J.Wang, S.Picaud, C.H.Arrowsmith, A.Edward C.Bountra, F.Von Delft, S.Knapp
compound		source
Molecule: Aurora Kinase B Chain: A Fragment: Residues 55-344 Synonym: Aurora 1, Aurora B, Aurora- And Ipl1-Like Midbody- Protein 1, Aim-1, Auroraipl1-Related Kinase 2, Ark-2, Auro Kinase 2, Stk-1, Serinethreonine 12 -Protein Kinase Serinethreonine-Protein Kinase 5, Serinethreonine-Protein Aurora-B; Ec: 2.7.11.1 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_plasmid: Pnic28-Bsa4 Other_details: Mammalian Gene Collection Image 2819846
Molecule: Inner Centromere Protein Chain: D Fragment: Residues 835-903 Synonym: Incenp Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_plasmid: Pgtvl1-Sgc
symmetry	Space Group: P 31 2 1	R_factor 0.205 R_Free 0.264
crystal cell	length a length b length c angle alpha angle beta angle gamma 80.145 80.145 92.542 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	2.75 Å
ligand	VX6 BindingDB	enzyme	Transferase E.C.2.7.11.1 BRENDA
Gene Ontology	Chain Function Process Component A D
Primary reference	Crystal Structure of Human Aurora B in Complex with INCENP and VX-680., Elkins JM, Santaguida S, Musacchio A, Knapp S, J Med Chem. 2012 Sep 13;55(17):7841-8. Epub 2012 Sep 4. PMID:22920039

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (106 Kb) [Save to disk] Biological Unit Coordinates (4af3.pdb1.gz) 100 Kb LPC: Ligand-Protein Contacts for 4AF3 CSU: Contacts of Structural Units for 4AF3 Structure Factors (100 Kb) Retrieve 4AF3 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 4AF3 from S2C, [Save to disk] Re-refined 4af3 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4AF3 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 4AF3

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 4AF3, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4af3] [4af3_D] [4af3_A] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 4AF3: [S_TKc ] by SMART

Other resources with information on 4AF3

Community annotation for 4AF3 at PDBWiki (http://pdbwiki.org)

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