4ATM Structural Protein date May 08, 2012
title Crystal Structure Of The Bar Domain Of Human Amphiphysin, Isoform 1 At 1.8 Angstrom Resolution Featuring Increased Order At The N-Terminus.
authors C.K.Allerston, T.Krojer, C.H.Arrowsmith, J.Weigelt, A.Edwards, C. F.Von Delft, O.Gileadi
compound source
Molecule: Amphiphysin
Chain: A
Fragment: Residues 1-242
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_variant: R3-Prare2
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pnic28-Bsa4
symmetry Space Group: P 32 2 1
R_factor 0.1872 R_Free 0.2181
length a length b length c angle alpha angle beta angle gamma
82.390 82.390 86.590 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.78 Å
ligand EDO, GOL enzyme
note 4ATM supersedes 4A3A

Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (89 Kb) [Save to disk]
  • Biological Unit Coordinates (4atm.pdb1.gz) 164 Kb
  • LPC: Ligand-Protein Contacts for 4ATM
  • CSU: Contacts of Structural Units for 4ATM
  • Structure Factors (245 Kb)
  • Retrieve 4ATM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4ATM from S2C, [Save to disk]
  • Re-refined 4atm structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4ATM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4ATM
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4ATM, from MSDmotif at EBI
  • Fold representative 4atm from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4atm] [4atm_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4ATM: [BAR ] by SMART
  • Other resources with information on 4ATM
  • Community annotation for 4ATM at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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