4AVX Signaling Protein date May 30, 2012
title Hepatocyte Growth Factor-Regulated Tyrosine Kinase Substrate Bound To An Ip2 Compound At 1.68 A Resolution
authors E.Williams, P.Canning, L.Shrestha, T.Krojer, M.Vollmar, A.Slowey, F.Von Delft, C.H.Arrowsmith, A.M.Edwards, J.Weigelt, C.Bountra,
compound source
Molecule: Hepatocyte Growth Factor-Regulated Tyrosine Kinas Substrate;
Chain: A
Fragment: Vhs And Fyve Domains, Residues 691-915
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pnic28-Bsa4
symmetry Space Group: P 1 21 1
R_factor 0.181 R_Free 0.231
length a length b length c angle alpha angle beta angle gamma
27.825 67.545 57.423 90.00 103.51 90.00
method X-Ray Diffractionresolution 1.68 Å
ligand EDO, ITP, ZN enzyme

Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (81 Kb) [Save to disk]
  • Biological Unit Coordinates (4avx.pdb1.gz) 76 Kb
  • LPC: Ligand-Protein Contacts for 4AVX
  • CSU: Contacts of Structural Units for 4AVX
  • Structure Factors (819 Kb)
  • Retrieve 4AVX in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4AVX from S2C, [Save to disk]
  • Re-refined 4avx structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4AVX in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4AVX
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4AVX, from MSDmotif at EBI
  • Fold representative 4avx from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4avx] [4avx_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4AVX: [FYVE] [VHS ] by SMART
  • Other resources with information on 4AVX
  • Community annotation for 4AVX at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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