4AW6 Hydrolase date May 31, 2012
title Crystal Structure Of The Human Nuclear Membrane Zinc Metallo Zmpste24 (Face1)
authors A.C.W.Pike, Y.Y.Dong, A.Quigley, L.Dong, C.D.O.Cooper, A.Chaikuad S.Goubin, L.Shrestha, Q.Li, S.Mukhopadhyay, J.Yang, X.Xia, C.A.Sh A.J.Barr, G.Berridge, R.Chalk, J.E.Bray, F.Von Delft, A.Bullock, C.Bountra, C.H.Arrowsmith, A.Edwards, N.Burgess-Brown, E.P.Carp
compound source
Molecule: Caax Prenyl Protease 1 Homolog
Chain: A, B, D, E
Synonym: Zmpste24, Farnesylated Proteins-Converting Enzyme Prenyl Protein-Specific Endoprotease 1, Zinc Metalloprotein Homolog;
Ec: 3.4.24.84
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_cell_line: Sf9
Expression_system_vector_type: Baculovirus
Expression_system_plasmid: Pfb-Ct10hf-Lic
symmetry Space Group: P 1
R_factor 0.246 R_Free 0.264
crystal
cell
length a length b length c angle alpha angle beta angle gamma
60.987 95.451 131.095 76.73 79.64 72.61
method X-Ray Diffractionresolution 3.40 Å
ligand PC1, ZN enzyme Hydrolase E.C.3.4.24.84 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, D, E, B


Primary referenceThe structural basis of ZMPSTE24-dependent laminopathies., Quigley A, Dong YY, Pike AC, Dong L, Shrestha L, Berridge G, Stansfeld PJ, Sansom MS, Edwards AM, Bountra C, von Delft F, Bullock AN, Burgess-Brown NA, Carpenter EP, Science. 2013 Mar 29;339(6127):1604-7. doi: 10.1126/science.1231513. PMID:23539603
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (570 Kb) [Save to disk]
  • Biological Unit Coordinates (4aw6.pdb1.gz) 146 Kb
  • Biological Unit Coordinates (4aw6.pdb2.gz) 143 Kb
  • Biological Unit Coordinates (4aw6.pdb3.gz) 145 Kb
  • Biological Unit Coordinates (4aw6.pdb4.gz) 140 Kb
  • Biological Unit Coordinates (4aw6.pdb5.gz) 284 Kb
  • Biological Unit Coordinates (4aw6.pdb6.gz) 281 Kb
  • LPC: Ligand-Protein Contacts for 4AW6
  • CSU: Contacts of Structural Units for 4AW6
  • Structure Factors (1199 Kb)
  • Retrieve 4AW6 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4AW6 from S2C, [Save to disk]
  • Re-refined 4aw6 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4AW6 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4AW6
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4AW6, from MSDmotif at EBI
  • Fold representative 4aw6 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4aw6_A] [4aw6_D] [4aw6] [4aw6_E] [4aw6_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4AW6
  • Community annotation for 4AW6 at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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