4AY5 Transferase Peptide date Jun 18, 2012
title Human O-Glcnac Transferase (Ogt) In Complex With Udp And Gly
authors M.Schimpl, X.Zheng, D.E.Blair, A.W.Schuettelkopf, I.Navratilova, T.Aristotelous, A.T.Ferenbach, M.A.Macnaughtan, V.S.Borodkin, D Aalten
compound source
Molecule: Udp-N-Acetylglucosamine--Peptide N-Acetylglucosam Transferase 110 Kda Subunit;
Chain: A, B, C, D
Fragment: Tpr (Truncated) And Catalytic Domain, Residues 31
Synonym: O-Glcnac Transferase Subunit P110, O-Linked N-Acet Glucosamine Transferase 110 Kda Subunit, Ogt;
Ec: 2.4.1.255
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_variant: Arcticexpress (Ril)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex6p1

Molecule: Gtab1tide
Chain: I, J, K, L
Engineered: Yes

Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630
symmetry Space Group: P 3 2 1
R_factor 0.174 R_Free 0.204
crystal
cell
length a length b length c angle alpha angle beta angle gamma
274.170 274.170 142.150 90.00 90.00 120.00
method X-Ray Diffractionresolution 3.15 Å
ligand NAG, UDP enzyme Transferase E.C.2.4.1.255 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceO-GlcNAc transferase invokes nucleotide sugar pyrophosphate participation in catalysis., Schimpl M, Zheng X, Borodkin VS, Blair DE, Ferenbach AT, Schuttelkopf AW, Navratilova I, Aristotelous T, Albarbarawi O, Robinson DA, Macnaughtan MA, van Aalten DM, Nat Chem Biol. 2012 Dec;8(12):969-74. doi: 10.1038/nchembio.1108. Epub 2012 Oct, 28. PMID:23103942
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (454 Kb) [Save to disk]
  • Biological Unit Coordinates (4ay5.pdb1.gz) 117 Kb
  • Biological Unit Coordinates (4ay5.pdb2.gz) 116 Kb
  • Biological Unit Coordinates (4ay5.pdb3.gz) 116 Kb
  • Biological Unit Coordinates (4ay5.pdb4.gz) 117 Kb
  • LPC: Ligand-Protein Contacts for 4AY5
  • CSU: Contacts of Structural Units for 4AY5
  • Structure Factors (1588 Kb)
  • Retrieve 4AY5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4AY5 from S2C, [Save to disk]
  • Re-refined 4ay5 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4AY5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4AY5
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4AY5, from MSDmotif at EBI
  • Fold representative 4ay5 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4ay5_B] [4ay5] [4ay5_C] [4ay5_D] [4ay5_K] [4ay5_L] [4ay5_I] [4ay5_J] [4ay5_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4AY5: [TPR ] by SMART
  • Other resources with information on 4AY5
  • Community annotation for 4AY5 at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science