4AY6 Transferase date Jun 18, 2012
title Human O-Glcnac Transferase (Ogt) In Complex With Udp-5sglcna And Substrate Peptide
authors M.Schimpl, X.Zheng, D.E.Blair, A.W.Schuettelkopf, I.Navratilova, T.Aristotelous, A.T.Ferenbach, M.A.Macnaughtan, V.S.Borodkin, D.M.F.Van Aalten
compound source
Molecule: Udp-N-Acetylglucosamine--Peptide N-Acetylglucosaminyltrans Ferase 110 Kda Subunit;
Chain: A, B, C, D
Fragment: Tpr (Truncated) And Catalytic Domain, Residues 19
Synonym: 2.4.1.255, O-Glcnac Transferase Subunit P110, O-Li N-Acetylglucosamine Transferase 110 Kda Subunit, Ogt;
Ec: 2.4.1.255
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_variant: Arcticexpress Ril
Expression_system_plasmid: Pgex6p1

Molecule: Tgf-Beta-Activated Kinase 1 And Map3k7-Binding Pr
Chain: E, F, G, H
Fragment: Residues 389-401
Synonym: Mitogen-Activated Protein Kinase Kinase Kinase 7-Interacting Protein 1, Tgf-Beta-Activated Kinase 1-Bindi Protein 1, Tak1-Binding Protein 1;
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: P 3 2 1
R_factor 0.22665 R_Free 0.27216
crystal
cell
length a length b length c angle alpha angle beta angle gamma
275.439 275.439 142.632 90.00 90.00 120.00
method X-Ray Diffractionresolution 3.30 Å
ligand 12V, DNP, SO4 enzyme Transferase E.C.2.4.1.255 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceO-GlcNAc transferase invokes nucleotide sugar pyrophosphate participation in catalysis., Schimpl M, Zheng X, Borodkin VS, Blair DE, Ferenbach AT, Schuttelkopf AW, Navratilova I, Aristotelous T, Albarbarawi O, Robinson DA, Macnaughtan MA, van Aalten DM, Nat Chem Biol. 2012 Dec;8(12):969-74. doi: 10.1038/nchembio.1108. Epub 2012 Oct, 28. PMID:23103942
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (462 Kb) [Save to disk]
  • Biological Unit Coordinates (4ay6.pdb1.gz) 120 Kb
  • Biological Unit Coordinates (4ay6.pdb2.gz) 119 Kb
  • Biological Unit Coordinates (4ay6.pdb3.gz) 119 Kb
  • Biological Unit Coordinates (4ay6.pdb4.gz) 120 Kb
  • LPC: Ligand-Protein Contacts for 4AY6
  • CSU: Contacts of Structural Units for 4AY6
  • Structure Factors (1427 Kb)
  • Retrieve 4AY6 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4AY6 from S2C, [Save to disk]
  • Re-refined 4ay6 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4AY6 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4AY6
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4AY6, from MSDmotif at EBI
  • Fold representative 4ay6 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4ay6_E] [4ay6_H] [4ay6_B] [4ay6_D] [4ay6_G] [4ay6] [4ay6_A] [4ay6_C] [4ay6_F]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4AY6: [TPR ] by SMART
  • Other resources with information on 4AY6
  • Community annotation for 4AY6 at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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