4BC4 Crystal structure of human D-xylulokinase in complex with D-xylulose date
authors Bunker, R.D., Loomes, K.M., Baker, E.N.
compound source
symmetry
R_factor
R_Free 0.1865
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.79
ligand EDO, MSE, XUL enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, C, B
  • xylulokinase activity


  • Primary referenceStructure and function of human xylulokinase, an enzyme with important roles in carbohydrate metabolism., Bunker RD, Bulloch EM, Dickson JM, Loomes KM, Baker EN, J Biol Chem. 2012 Nov 23. PMID:23179721
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (977 Kb) [Save to disk]
  • Biological Unit Coordinates (4bc4.pdb1.gz) 325 Kb
  • Biological Unit Coordinates (4bc4.pdb2.gz) 327 Kb
  • Biological Unit Coordinates (4bc4.pdb3.gz) 326 Kb
  • LPC: Ligand-Protein Contacts for 4BC4
  • CSU: Contacts of Structural Units for 4BC4
  • Structure Factors (3272 Kb)
  • Retrieve 4BC4 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4BC4 from S2C, [Save to disk]
  • Re-refined 4bc4 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4BC4 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4BC4
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4BC4, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4bc4_A] [4bc4_C] [4bc4_B] [4bc4]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4BC4
  • Community annotation for 4BC4 at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science