4BEJ Hydrolase date Mar 11, 2013
title Nucleotide-Free Dynamin 1-Like Protein (Dnm1l, Drp1, Dlp1)
authors C.Froehlich, D.Schwefel, K.Faelber, O.Daumke
compound source
Molecule: Dynamin 1-Like Protein
Chain: A, B, C, D
Fragment: Dnm1l Delta B Insert, Residues 1-516,632-725
Synonym: Dnm1pvps1p-Like Protein, Dvlp, Dynamin Family Mem Proline-Rich Carboxyl-Terminal Domain Less, Dymple, Dynami Protein, Dynamin-Like Protein 4, Dynamin-Like Protein Iv, Dynamin-Related Protein 1;
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_variant: Rosetta
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Modified Pet28a
symmetry Space Group: P 1 2 1
R_factor 0.2509 R_Free 0.2761
length a length b length c angle alpha angle beta angle gamma
101.470 80.770 208.272 90.00 93.45 90.00
method X-Ray Diffractionresolution 3.48 Å
enzyme Hydrolase E.C. BRENDA
A, D, C, B

Primary referenceStructural insights into oligomerization and mitochondrial remodelling of dynamin 1-like protein., Frohlich C, Grabiger S, Schwefel D, Faelber K, Rosenbaum E, Mears J, Rocks O, Daumke O, EMBO J. 2013 May 2;32(9):1280-92. doi: 10.1038/emboj.2013.74. Epub 2013 Apr 12. PMID:23584531
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (731 Kb) [Save to disk]
  • Biological Unit Coordinates (4bej.pdb1.gz) 364 Kb
  • Biological Unit Coordinates (4bej.pdb2.gz) 361 Kb
  • CSU: Contacts of Structural Units for 4BEJ
  • Structure Factors (242 Kb)
  • Retrieve 4BEJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4BEJ from S2C, [Save to disk]
  • Re-refined 4bej structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4BEJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4BEJ
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4BEJ, from MSDmotif at EBI
  • Fold representative 4bej from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4bej_A] [4bej_C] [4bej_D] [4bej] [4bej_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4BEJ: [DYNc] [GED ] by SMART
  • Other resources with information on 4BEJ
  • Community annotation for 4BEJ at PDBWiki (http://pdbwiki.org)

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