4BJI Dna Binding Protein date Apr 18, 2013
title Sfc1-Dbd
authors N.M.I.Taylor, F.Baudin, G.Von Scheven, C.W.Muller
compound source
Molecule: Transcription Factor Tau Subunit Sfc1
Chain: A
Fragment: Dna-Binding Domain, Residues 186-396
Synonym: Tfiiic Subunit Sfc1, Transcription Factor C Subuni
Engineered: Yes
Organism_scientific: Schizosaccharomyces Pombe
Organism_common: Fission Yeast
Organism_taxid: 1264690
Strain: 972
Atcc: 24843
Expression_system: Escherichia Coli
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_variant: Ripl
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Petm11
symmetry Space Group: P 21 21 21
R_factor 0.1515 R_Free 0.1698
length a length b length c angle alpha angle beta angle gamma
35.380 67.640 88.060 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.45 Å
ligand MSE enzyme

Primary referenceRNA polymerase III-specific general transcription factor IIIC contains a heterodimer resembling TFIIF Rap30/Rap74., Taylor NM, Baudin F, von Scheven G, Muller CW, Nucleic Acids Res. 2013 Aug 5. PMID:23921640
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (119 Kb) [Save to disk]
  • Biological Unit Coordinates (4bji.pdb1.gz) 110 Kb
  • LPC: Ligand-Protein Contacts for 4BJI
  • CSU: Contacts of Structural Units for 4BJI
  • Structure Factors (3751 Kb)
  • Retrieve 4BJI in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4BJI from S2C, [Save to disk]
  • Re-refined 4bji structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4BJI in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4BJI
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4BJI, from MSDmotif at EBI
  • Fold representative 4bji from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4bji_A] [4bji]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4BJI
  • Community annotation for 4BJI at PDBWiki (http://pdbwiki.org)

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