4BWE Membrane Protein date Jul 01, 2013
title Crystal Structure Of C-Terminally Truncated Glypican-1 After Controlled Dehydration To 86 Percent Relative Humidity
authors W.Awad, G.Svensson Birkedal, M.M.G.M.Thunnissen, K.Mani, D.T.Log
compound source
Molecule: Glypican-1
Chain: A, B, C, D
Fragment: Unp Residues 24-479
Synonym: Secreted Glypican-1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Gpc1
Expression_system: Homo Sapiens
Expression_system_taxid: 9606
Expression_system_cell_line: Hek293
symmetry Space Group: P 1 21 1
R_factor 0.229 R_Free 0.280
crystal
cell
length a length b length c angle alpha angle beta angle gamma
47.230 166.720 139.090 90.00 90.80 90.00
method X-Ray Diffractionresolution 2.46 Å
ligand CA, NAG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceImprovements in the order, isotropy and electron density of glypican-1 crystals by controlled dehydration., Awad W, Svensson Birkedal G, Thunnissen MM, Mani K, Logan DT, Acta Crystallogr D Biol Crystallogr. 2013 Dec;69(Pt 12):2524-33. doi:, 10.1107/S0907444913025250. Epub 2013 Nov 19. PMID:24311593
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (561 Kb) [Save to disk]
  • Biological Unit Coordinates (4bwe.pdb1.gz) 140 Kb
  • Biological Unit Coordinates (4bwe.pdb2.gz) 144 Kb
  • Biological Unit Coordinates (4bwe.pdb3.gz) 137 Kb
  • Biological Unit Coordinates (4bwe.pdb4.gz) 143 Kb
  • LPC: Ligand-Protein Contacts for 4BWE
  • CSU: Contacts of Structural Units for 4BWE
  • Structure Factors (670 Kb)
  • Retrieve 4BWE in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4BWE from S2C, [Save to disk]
  • Re-refined 4bwe structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4BWE in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4BWE
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4BWE, from MSDmotif at EBI
  • Fold representative 4bwe from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4bwe_C] [4bwe_D] [4bwe_B] [4bwe_A] [4bwe]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4BWE
  • Community annotation for 4BWE at PDBWiki (http://pdbwiki.org)

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