4C0G Gene Regulation date Aug 01, 2013
title Structure Of The Not-Box Domain Of Human Cnot3
authors A.Boland, Y.Chen, T.Raisch, S.Jonas, E.Izaurralde, O.Weichenriede
compound source
Molecule: Ccr4-Not Transcription Complex Subunit 3
Chain: A, B, C, D, E, F
Fragment: Not-Box Domain, Residues 656-753
Synonym: Ccr4-Associated Factor 3, Leukocyte Receptor Clust 2, Cnot3;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_variant: Star
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Petm60
symmetry Space Group: P 21 21 21
R_factor 0.221 R_Free 0.257
length a length b length c angle alpha angle beta angle gamma
52.300 97.570 141.530 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.40 Å
ligand MSE enzyme
F, A, D, C, E, B

Primary referenceStructure and assembly of the NOT module of the human CCR4-NOT complex., Boland A, Chen Y, Raisch T, Jonas S, Kuzuoglu-Ozturk D, Wohlbold L, Weichenrieder O, Izaurralde E, Nat Struct Mol Biol. 2013 Oct 13. doi: 10.1038/nsmb.2681. PMID:24121232
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (308 Kb) [Save to disk]
  • Biological Unit Coordinates (4c0g.pdb1.gz) 101 Kb
  • Biological Unit Coordinates (4c0g.pdb2.gz) 101 Kb
  • Biological Unit Coordinates (4c0g.pdb3.gz) 101 Kb
  • LPC: Ligand-Protein Contacts for 4C0G
  • CSU: Contacts of Structural Units for 4C0G
  • Structure Factors (832 Kb)
  • Retrieve 4C0G in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4C0G from S2C, [Save to disk]
  • Re-refined 4c0g structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4C0G in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4C0G
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4C0G, from MSDmotif at EBI
  • Fold representative 4c0g from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4c0g_B] [4c0g_A] [4c0g_F] [4c0g] [4c0g_D] [4c0g_C] [4c0g_E]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4C0G
  • Community annotation for 4C0G at PDBWiki (http://pdbwiki.org)

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