4CAH Membrane Protein date Oct 08, 2013
title Structure Of Inner Dysf Domain Of Human Dysferlin
authors A.Sula, A.R.Cole, C.Yeats, C.Orengo, N.H.Keep
compound source
Molecule: Dysferlin
Chain: B
Fragment: Inner Dysf Domain, Residues 942-1052
Synonym: Dystrophy-Associated Fer-1-Like Protein, Fer-1-Lik Protein 1;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Tissue: Muscle
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_variant: Rosetta2
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pnic28bsa4
Other_details: Cdna Provided By Jain Foundation
symmetry Space Group: P 21 3
R_factor 0.1775 R_Free 0.1908
crystal
cell
length a length b length c angle alpha angle beta angle gamma
75.953 75.953 75.953 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.90 Å
ligand PO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
B


Primary referenceCrystal structures of the human Dysferlin inner DysF domain., Sula A, Cole AR, Yeats C, Orengo C, Keep NH, BMC Struct Biol. 2014 Jan 17;14(1):3. doi: 10.1186/1472-6807-14-3. PMID:24438169
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (48 Kb) [Save to disk]
  • Biological Unit Coordinates (4cah.pdb1.gz) 43 Kb
  • LPC: Ligand-Protein Contacts for 4CAH
  • CSU: Contacts of Structural Units for 4CAH
  • Structure Factors (627 Kb)
  • Retrieve 4CAH in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4CAH from S2C, [Save to disk]
  • Re-refined 4cah structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4CAH in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4CAH
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4CAH, from MSDmotif at EBI
  • Fold representative 4cah from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4cah] [4cah_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4CAH: [DysFC] [DysFN ] by SMART
  • Other resources with information on 4CAH
  • Community annotation for 4CAH at PDBWiki (http://pdbwiki.org)

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