4CAI Membrane Protein date Oct 08, 2013
title Structure Of Inner Dysf Domain Of Human Dysferlin
authors A.Sula, A.R.Cole, C.Yeats, C.Orengo, N.H.Keep
compound source
Molecule: Dysferlin
Chain: A, B, C
Fragment: Inner Dysf Domain, Residues 942-1052
Synonym: Dystrophy-Associated Fer-1-Like Protein, Fer-1-Lik Protein 1;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Tissue: Muscle
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_variant: Rosetta2
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pnic28bsa4
Other_details: Cdna Provided By Jain Foundation
symmetry Space Group: P 21 21 21
R_factor 0.1858 R_Free 0.2271
crystal
cell
length a length b length c angle alpha angle beta angle gamma
79.894 77.473 74.504 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.20 Å
ligand PO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, C, B


Primary referenceCrystal structures of the human Dysferlin inner DysF domain., Sula A, Cole AR, Yeats C, Orengo C, Keep NH, BMC Struct Biol. 2014 Jan 17;14(1):3. doi: 10.1186/1472-6807-14-3. PMID:24438169
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (133 Kb) [Save to disk]
  • Biological Unit Coordinates (4cai.pdb1.gz) 43 Kb
  • Biological Unit Coordinates (4cai.pdb2.gz) 43 Kb
  • Biological Unit Coordinates (4cai.pdb3.gz) 43 Kb
  • Biological Unit Coordinates (4cai.pdb4.gz) 125 Kb
  • LPC: Ligand-Protein Contacts for 4CAI
  • CSU: Contacts of Structural Units for 4CAI
  • Structure Factors (1289 Kb)
  • Retrieve 4CAI in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4CAI from S2C, [Save to disk]
  • Re-refined 4cai structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4CAI in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4CAI
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4CAI, from MSDmotif at EBI
  • Fold representative 4cai from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4cai_C] [4cai_A] [4cai] [4cai_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4CAI: [DysFC] [DysFN ] by SMART
  • Other resources with information on 4CAI
  • Community annotation for 4CAI at PDBWiki (http://pdbwiki.org)

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