OCA Atlas for 4D0T

4D0T

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

EDO, MN, NGA, UD2, UDP

enzyme

Gene
Ontology

Chain	Function	Process	Component
C, A, D, B, F, E

Primary reference

Substrate-Guided Front-Face Reaction Revealed by Combined Structural Snapshots and Metadynamics for the Polypeptide N-Acetylgalactosaminyltransferase 2., Lira-Navarrete E, Iglesias-Fernandez J, Zandberg WF, Companon I, Kong Y, Corzana F, Pinto BM, Clausen H, Peregrina JM, Vocadlo DJ, Rovira C, Hurtado-Guerrero R, Angew Chem Int Ed Engl. 2014 Jun 20. doi: 10.1002/anie.201402781. PMID:24954443

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (980 Kb) [Save to disk]

Biological Unit Coordinates (4d0t.pdb1.gz) 328 Kb

Biological Unit Coordinates (4d0t.pdb2.gz) 326 Kb

Biological Unit Coordinates (4d0t.pdb3.gz) 330 Kb

LPC: Ligand-Protein Contacts for 4D0T

CSU: Contacts of Structural Units for 4D0T

Structure Factors (7324 Kb)

Retrieve 4D0T in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 4D0T from S2C, [Save to disk]

Re-refined 4d0t structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4D0T in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4d0t_F] [4d0t_B] [4d0t_D] [4d0t] [4d0t_C] [4d0t_A] [4d0t_E] [4d0t_P] [4d0t_Z]

SWISS-PROT database:

Domain found in 4D0T: [RICIN ] by SMART

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