4D11 date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand BBK, MN, UDP enzyme
Gene
Ontology
ChainFunctionProcessComponent
F, C, D, E, B, A


Primary referenceSubstrate-Guided Front-Face Reaction Revealed by Combined Structural Snapshots and Metadynamics for the Polypeptide N-Acetylgalactosaminyltransferase 2., Lira-Navarrete E, Iglesias-Fernandez J, Zandberg WF, Companon I, Kong Y, Corzana F, Pinto BM, Clausen H, Peregrina JM, Vocadlo DJ, Rovira C, Hurtado-Guerrero R, Angew Chem Int Ed Engl. 2014 Jun 20. doi: 10.1002/anie.201402781. PMID:24954443
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (900 Kb) [Save to disk]
  • Biological Unit Coordinates (4d11.pdb1.gz) 324 Kb
  • Biological Unit Coordinates (4d11.pdb2.gz) 327 Kb
  • Biological Unit Coordinates (4d11.pdb3.gz) 156 Kb
  • Biological Unit Coordinates (4d11.pdb4.gz) 103 Kb
  • LPC: Ligand-Protein Contacts for 4D11
  • CSU: Contacts of Structural Units for 4D11
  • Structure Factors (4673 Kb)
  • Retrieve 4D11 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4D11 from S2C, [Save to disk]
  • Re-refined 4d11 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4D11 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4d11] [4d11_A] [4d11_B] [4d11_C] [4d11_D] [4d11_E] [4d11_F] [4d11_L] [4d11_O] [4d11_P] [4d11_X] [4d11_Z]
  • SWISS-PROT database:
  • Domain found in 4D11: [RICIN ] by SMART

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