4D61 date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
Gene
Ontology
ChainFunctionProcessComponent
A


B


C


D


E


F


G


H


I


J


L


M


N


O


P


Q


R


S


T


U


V


W


X


Y


Z


a


b


c


d


e


f


h


i


Primary referenceCryo-EM of Ribosomal 80S Complexes with Termination Factors Reveals the Translocated Cricket Paralysis Virus IRES., Muhs M, Hilal T, Mielke T, Skabkin MA, Sanbonmatsu KY, Pestova TV, Spahn CM, Mol Cell. 2015 Feb 5;57(3):422-432. doi: 10.1016/j.molcel.2014.12.016. Epub 2015 , Jan 15. PMID:25601755
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1465 Kb) [Save to disk]
  • Biological Unit Coordinates (4d61.pdb1.gz) 1453 Kb
  • CSU: Contacts of Structural Units for 4D61
  • Retrieve 4D61 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4D61 from S2C, [Save to disk]
    • View 4D61 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4d61] [4d61_1] [4d61_A] [4d61_B] [4d61_C] [4d61_D] [4d61_E] [4d61_F] [4d61_G] [4d61_H] [4d61_I] [4d61_J] [4d61_K] [4d61_L] [4d61_M] [4d61_N] [4d61_c] [4d61_O] [4d61_P] [4d61_d] [4d61_Q] [4d61_R] [4d61_e] [4d61_S] [4d61_T] [4d61_f] [4d61_U] [4d61_V] [4d61_g] [4d61_W] [4d61_X] [4d61_h] [4d61_Y] [4d61_Z] [4d61_a] [4d61_i] [4d61_b] [4d61_j]
  • SWISS-PROT database:
  • Domains found in 4D61: [KH] [Ribosomal_S10] [Ribosomal_S13_N] [Ribosomal_S15] [Ribosomal_S19e] [Ribosomal_S27] [Ribosomal_S3Ae] [Ribosomal_S4] [Ribosomal_S6e] [S4] [UBQ] [WD40] [eRF1_1 ] by SMART

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