4DOT Hydrolase date Feb 10, 2012
title Crystal Structure Of Human Hrasls3.
authors P.D.Kiser, M.Golczak, A.E.Sears, D.T.Lodowski, K.Palczewski
compound source
Molecule: Group Xvi Phospholipase A2
Chain: A
Fragment: Hrasls3 N-Terminus, Unp Residues 1-132
Synonym: Adipose-Specific Phospholipase A2, Adpla, H-Rev 10 Homolog, Hras-Like Suppressor 1, Hras-Like Suppressor 3, Hr Hrev107-1, Hrev107-3, Renal Carcinoma Antigen Ny-Ren-65;
Ec: 3.1.1.-
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Pla2g16, Hrasls3, Hrev107
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 31 2 1
R_factor 0.203 R_Free 0.216
length a length b length c angle alpha angle beta angle gamma
62.446 62.446 73.922 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.96 Å
enzyme Hydrolase E.C.3.1.1 BRENDA
Primary referenceStructural Basis for the Acyltransferase Activity of Lecithin:Retinol Acyltransferase-like Proteins., Golczak M, Kiser PD, Sears AE, Lodowski DT, Blaner WS, Palczewski K, J Biol Chem. 2012 Jul 6;287(28):23790-807. Epub 2012 May 17. PMID:22605381
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (42 Kb) [Save to disk]
  • Biological Unit Coordinates (4dot.pdb1.gz) 37 Kb
  • CSU: Contacts of Structural Units for 4DOT
  • Structure Factors (77 Kb)
  • Retrieve 4DOT in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4DOT from S2C, [Save to disk]
  • Re-refined 4dot structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4DOT in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4DOT
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4DOT, from MSDmotif at EBI
  • Fold representative 4dot from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4dot_A] [4dot]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4DOT
  • Community annotation for 4DOT at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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