4DPZ Transferase date Feb 14, 2012
title Crystal Structure Of Human Hrasls2
authors P.D.Kiser, M.Golczak, A.E.Sears, D.T.Lodowski, K.Palczewski
compound source
Molecule: Hras-Like Suppressor 2
Chain: X
Fragment: Hrasls2 N-Terminus, Unp Residues 1-129
Ec: 2.3.1.-, 3.1.1.-
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Hrasls2
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21de3
Expression_system_plasmid: Pet30b
symmetry Space Group: P 1 21 1
R_factor 0.150 R_Free 0.179
crystal
cell
length a length b length c angle alpha angle beta angle gamma
41.738 37.078 45.423 90.00 113.38 90.00
method X-Ray Diffractionresolution 1.25 Å
ligand CSX enzyme Transferase E.C.2.3.1 BRENDA
Primary referenceStructural Basis for the Acyltransferase Activity of Lecithin:Retinol Acyltransferase-like Proteins., Golczak M, Kiser PD, Sears AE, Lodowski DT, Blaner WS, Palczewski K, J Biol Chem. 2012 Jul 6;287(28):23790-807. Epub 2012 May 17. PMID:22605381
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (46 Kb) [Save to disk]
  • Biological Unit Coordinates (4dpz.pdb1.gz) 41 Kb
  • LPC: Ligand-Protein Contacts for 4DPZ
  • CSU: Contacts of Structural Units for 4DPZ
  • Structure Factors (389 Kb)
  • Retrieve 4DPZ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4DPZ from S2C, [Save to disk]
  • View 4DPZ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4DPZ
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4DPZ, from MSDmotif at EBI
  • Fold representative 4dpz from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4dpz_X] [4dpz]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4DPZ
  • Community annotation for 4DPZ at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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