4DVB date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand PG4, SO4 enzyme
Primary referenceRezymogenation of active urokinase induced by an inhibitory antibody., Jiang L, Botkjaer KA, Andersen LM, Yuan C, Andreasen PA, Huang M, Biochem J. 2013 Jan 1;449(1):161-6. doi: 10.1042/BJ20121132. PMID:23016918
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (146 Kb) [Save to disk]
  • Biological Unit Coordinates (4dvb.pdb1.gz) 71 Kb
  • Biological Unit Coordinates (4dvb.pdb2.gz) 73 Kb
  • LPC: Ligand-Protein Contacts for 4DVB
  • CSU: Contacts of Structural Units for 4DVB
  • Structure Factors (879 Kb)
  • Retrieve 4DVB in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4DVB from S2C, [Save to disk]
  • Re-refined 4dvb structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4DVB in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4dvb] [4dvb_A] [4dvb_B] [4dvb_H] [4dvb_L]
  • SWISS-PROT database:
  • Domains found in 4DVB: [IG_like] [IGv ] by SMART

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