4DWN Apoptosis date Feb 26, 2012
title Crystal Structure Of Human Bincard Card
authors K.E.Chen, B.Kobe, J.L.Martin
compound source
Molecule: Bcl10-Interacting Card Protein
Chain: A, B
Fragment: Caspase Recruitment Domain
Synonym: Bincard
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: C9orf89
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pmcsg7
symmetry Space Group: P 1
R_factor 0.163 R_Free 0.197
crystal
cell
length a length b length c angle alpha angle beta angle gamma
32.088 36.513 43.750 108.50 90.29 111.13
method X-Ray Diffractionresolution 1.58 Å
ligand CSO, SO4 enzyme
Primary referenceThe structure of the caspase recruitment domain of BinCARD reveals that all three cysteines can be oxidized., Chen KE, Richards AA, Caradoc-Davies TT, Vajjhala PR, Robin G, Lua LH, Hill JM, Schroder K, Sweet MJ, Kellie S, Kobe B, Martin J, Acta Crystallogr D Biol Crystallogr. 2013 May;69(Pt 5):774-84. doi:, 10.1107/S0907444913001558. Epub 2013 Apr 11. PMID:23633586
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (72 Kb) [Save to disk]
  • Biological Unit Coordinates (4dwn.pdb1.gz) 35 Kb
  • Biological Unit Coordinates (4dwn.pdb2.gz) 35 Kb
  • LPC: Ligand-Protein Contacts for 4DWN
  • CSU: Contacts of Structural Units for 4DWN
  • Structure Factors (483 Kb)
  • Retrieve 4DWN in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4DWN from S2C, [Save to disk]
  • Re-refined 4dwn structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4DWN in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4DWN
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4DWN, from MSDmotif at EBI
  • Fold representative 4dwn from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4dwn_B] [4dwn] [4dwn_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4DWN
  • Community annotation for 4DWN at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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