4DX9 ICAP1 in complex with integrin beta 1 cytoplasmic tail date
authors Liu, W., Draheim, K., Zhang, R., Calderwood, D.A., Boggon, T.J.
compound source
R_Free 0.31194
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.99
ligand MSE enzyme
Primary referenceMechanism for KRIT1 Release of ICAP1-Mediated Suppression of Integrin Activation., Liu W, Draheim KM, Zhang R, Calderwood DA, Boggon TJ, Mol Cell. 2013 Jan 9. pii: S1097-2765(12)01014-3. doi:, 10.1016/j.molcel.2012.12.005. PMID:23317506
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (864 Kb) [Save to disk]
  • Biological Unit Coordinates (4dx9.pdb1.gz) 44 Kb
  • Biological Unit Coordinates (4dx9.pdb2.gz) 49 Kb
  • Biological Unit Coordinates (4dx9.pdb3.gz) 45 Kb
  • Biological Unit Coordinates (4dx9.pdb4.gz) 49 Kb
  • Biological Unit Coordinates (4dx9.pdb5.gz) 51 Kb
  • Biological Unit Coordinates (4dx9.pdb6.gz) 46 Kb
  • Biological Unit Coordinates (4dx9.pdb7.gz) 49 Kb
  • Biological Unit Coordinates (4dx9.pdb8.gz) 26 Kb
  • Biological Unit Coordinates (4dx9.pdb9.gz) 29 Kb
  • LPC: Ligand-Protein Contacts for 4DX9
  • CSU: Contacts of Structural Units for 4DX9
  • Structure Factors (6240 Kb)
  • Retrieve 4DX9 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4DX9 from S2C, [Save to disk]
  • Re-refined 4dx9 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4DX9 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4DX9
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4DX9, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4dx9_n] [4dx9_u] [4dx9_U] [4dx9_i] [4dx9_h] [4dx9_Q] [4dx9_3] [4dx9_y] [4dx9_B] [4dx9_g] [4dx9_s] [4dx9_q] [4dx9_A] [4dx9_x] [4dx9_O] [4dx9_a] [4dx9_7] [4dx9_d] [4dx9_K] [4dx9_L] [4dx9_I] [4dx9_t] [4dx9_C] [4dx9] [4dx9_f] [4dx9_m] [4dx9_j] [4dx9_2] [4dx9_Y] [4dx9_J] [4dx9_Z] [4dx9_l] [4dx9_G] [4dx9_5] [4dx9_8] [4dx9_1] [4dx9_T] [4dx9_X] [4dx9_D] [4dx9_r] [4dx9_R] [4dx9_e] [4dx9_W] [4dx9_F] [4dx9_E] [4dx9_6] [4dx9_v] [4dx9_V] [4dx9_H] [4dx9_w] [4dx9_M] [4dx9_N] [4dx9_o] [4dx9_p] [4dx9_k] [4dx9_4] [4dx9_b] [4dx9_P] [4dx9_c] [4dx9_S] [4dx9_0] [4dx9_9] [4dx9_z]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4DX9: [PTB ] by SMART
  • Other resources with information on 4DX9
  • Community annotation for 4DX9 at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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