4E45 Dna Binding Protein Hydrolase date Mar 12, 2012
title Crystal Structure Of The Hmhf1hmhf2 Histone-Fold Tetramer I With Fanconi Anemia Associated Helicase Hfancm
authors D.Fox Iii, Y.Zhao, W.Yang, W.Weidong
compound source
Molecule: Centromere Protein S
Chain: A, C, F, H, K, M
Fragment: Unp Residues 1-110
Synonym: Cenp-S, Apoptosis-Inducing Taf9-Like Domain-Contai Protein 1, Fancm-Interacting Histone Fold Protein 1, Fancon Associated Polypeptide Of 16 Kda;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Apitd1, Cenps, Faap16, Mhf1
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgexphis Bicistronic

Molecule: Centromere Protein X
Chain: B, D, G, I, L, N
Synonym: Cenp-X, Fancm-Interacting Histone Fold Protein 2, Anemia-Associated Polypeptide Of 10 Kda, Retinoic Acid-Indu D9 Protein Homolog, Stimulated By Retinoic Acid Gene 13 Pro Homolog;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Stra13, Cenpx, Faap10, Mhf2
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgexphis Bicistronic

Molecule: Fanconi Anemia Group M Protein
Chain: E, J, O
Fragment: Unp Residues 667-800
Synonym: Protein Facm, Atp-Dependent Rna Helicase Fancm, Fa Anemia-Associated Polypeptide Of 250 Kda, Faap250, Protein Ortholog;
Ec: 3.6.4.13
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Fancm, Kiaa1596
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Parallel Mbp
symmetry Space Group: P 1 21 1
R_factor 0.202 R_Free 0.245
crystal
cell
length a length b length c angle alpha angle beta angle gamma
110.980 69.970 116.050 90.00 91.60 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand GOL, ZN enzyme Hydrolase E.C.3.6.4.13 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
F, A, K, H, M, C


N, B, D, I, G, L


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (231 Kb) [Save to disk]
  • Biological Unit Coordinates (4e45.pdb1.gz) 78 Kb
  • Biological Unit Coordinates (4e45.pdb2.gz) 78 Kb
  • Biological Unit Coordinates (4e45.pdb3.gz) 73 Kb
  • LPC: Ligand-Protein Contacts for 4E45
  • CSU: Contacts of Structural Units for 4E45
  • Structure Factors (1695 Kb)
  • Retrieve 4E45 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4E45 from S2C, [Save to disk]
  • Re-refined 4e45 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4E45 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4E45
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4E45, from MSDmotif at EBI
  • Fold representative 4e45 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4e45_E] [4e45_F] [4e45_H] [4e45_D] [4e45_C] [4e45] [4e45_L] [4e45_A] [4e45_K] [4e45_B] [4e45_O] [4e45_M] [4e45_J] [4e45_G] [4e45_I] [4e45_N]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4E45
  • Community annotation for 4E45 at PDBWiki (http://pdbwiki.org)

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