4FA0 Hydrolase date May 21, 2012
title Crystal Structure Of Human Adpla To 2.65 A Resolution
authors S.Lovell, K.P.Battaile, L.Addington, N.Zhang, J.L.U.M.Rao, A.R.Mo
compound source
Molecule: Group Xvi Phospholipase A1a2
Chain: A
Fragment: Unp Residues 1-134
Synonym: Adipose-Specific Phospholipase A2, Adpla, H-Rev 10 Homolog, Hras-Like Suppressor 1, Hras-Like Suppressor 3, Hr Hrev107-1, Hrev107-3, Renal Carcinoma Antigen Ny-Ren-65;
Ec: 3.1.1.32, 3.1.1.4
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Pla2g16, Hrasls3, Hrev107
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21 (De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Ptbmale
symmetry Space Group: P 31 2 1
R_factor 0.206 R_Free 0.247
crystal
cell
length a length b length c angle alpha angle beta angle gamma
59.991 59.991 74.006 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.65 Å
ligand
enzyme Hydrolase E.C.3.1.1.32 BRENDA
Primary referenceStructure/Function Relationships of Adipose Phospholipase A2 Containing a Cys-His-His Catalytic Triad., Pang XY, Cao J, Addington L, Lovell S, Battaile KP, Zhang N, Rao JL, Dennis EA, Moise AR, J Biol Chem. 2012 Aug 25. PMID:22923616
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (21 Kb) [Save to disk]
  • Biological Unit Coordinates (4fa0.pdb1.gz) 17 Kb
  • CSU: Contacts of Structural Units for 4FA0
  • Structure Factors (326 Kb)
  • Retrieve 4FA0 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4FA0 from S2C, [Save to disk]
  • Re-refined 4fa0 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4FA0 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4FA0
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4FA0, from MSDmotif at EBI
  • Fold representative 4fa0 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4fa0_A] [4fa0]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4FA0
  • Community annotation for 4FA0 at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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