4FPR Protein Binding date Jun 22, 2012
title Structure Of A Fungal Protein
authors K.Blondeau, F.Blaise, M.Graille, J.Linglin, B.Ollivier, A.Labarde G.Daverdin, M.H.Balesdent, T.Rouxel, H.Van Tilbeurgh, I.Fudal
compound source
Molecule: Avirulence Effector Avrlm4-7
Chain: A, B, C, D
Engineered: Yes
Mutation: Yes
Organism_scientific: Leptosphaeria Maculans
Organism_common: Blackleg Fungus
Organism_taxid: 985895
Strain: Jn3 Isolate V23.1.3 Race Av1-4-5-6-7-8
Gene: Avrlm4-7, Lema_p086290.1
Expression_system: Komagataella Pastoris
Expression_system_taxid: 4922
symmetry Space Group: P 43
R_factor 0.209 R_Free 0.283
length a length b length c angle alpha angle beta angle gamma
61.150 61.150 155.340 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.40 Å
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (94 Kb) [Save to disk]
  • Biological Unit Coordinates (4fpr.pdb1.gz) 24 Kb
  • Biological Unit Coordinates (4fpr.pdb2.gz) 23 Kb
  • Biological Unit Coordinates (4fpr.pdb3.gz) 24 Kb
  • Biological Unit Coordinates (4fpr.pdb4.gz) 23 Kb
  • Biological Unit Coordinates (4fpr.pdb5.gz) 45 Kb
  • Biological Unit Coordinates (4fpr.pdb6.gz) 89 Kb
  • Biological Unit Coordinates (4fpr.pdb7.gz) 45 Kb
  • CSU: Contacts of Structural Units for 4FPR
  • Structure Factors (261 Kb)
  • Retrieve 4FPR in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4FPR from S2C, [Save to disk]
  • Re-refined 4fpr structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4FPR in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4FPR
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4FPR, from MSDmotif at EBI
  • Fold representative 4fpr from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4fpr_C] [4fpr_D] [4fpr_B] [4fpr] [4fpr_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4FPR
  • Community annotation for 4FPR at PDBWiki (http://pdbwiki.org)

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