4FZV Transferase date Jul 08, 2012
title Crystal Structure Of The Human Mterf4:Nsun4:Sam Ternary Comp
authors K.E.Guja, E.Yakubovskaya, E.Mejia, S.Castano, E.Hambardjieva, W.S M.Garcia-Diaz
compound source
Molecule: Putative Methyltransferase Nsun4
Chain: A
Synonym: Nol1nop2sun Domain Family Member 4
Ec: 2.1.1.-
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Nsun4
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Mterf Domain-Containing Protein 2
Chain: B
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Mterfd2, Hspc096
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: C 1 2 1
R_factor 0.165 R_Free 0.190
length a length b length c angle alpha angle beta angle gamma
298.667 53.226 52.963 90.00 98.75 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand EDO, FMT, MSE, SAM enzyme Transferase E.C.2.1.1 BRENDA


Primary referenceStructure of the Essential MTERF4:NSUN4 Protein Complex Reveals How an MTERF Protein Collaborates to Facilitate rRNA Modification., Yakubovskaya E, Guja KE, Mejia E, Castano S, Hambardjieva E, Choi WS, Garcia-Diaz M, Structure. 2012 Sep 25. pii: S0969-2126(12)00331-0. doi:, 10.1016/j.str.2012.08.027. PMID:23022348
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (196 Kb) [Save to disk]
  • Biological Unit Coordinates (4fzv.pdb1.gz) 187 Kb
  • LPC: Ligand-Protein Contacts for 4FZV
  • CSU: Contacts of Structural Units for 4FZV
  • Structure Factors (432 Kb)
  • Retrieve 4FZV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4FZV from S2C, [Save to disk]
  • Re-refined 4fzv structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4FZV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4FZV
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4FZV, from MSDmotif at EBI
  • Fold representative 4fzv from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4fzv_B] [4fzv] [4fzv_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4FZV: [Mterf ] by SMART
  • Other resources with information on 4FZV
  • Community annotation for 4FZV at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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