4HAE Protein Binding date Sep 26, 2012
title Crystal Structure Of The Cdyl2-Chromodomain
authors S.Qin, L.Dombrovski, W.Tempel, A.Dong, C.Xu, C.Bountra, C.H.Arrows A.M.Edwards, J.Min, H.Wu, Structural Genomics Consortium (Sgc)
compound source
Molecule: Chromodomain Y-Like Protein 2
Chain: A
Synonym: Cdy-Like 2
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Cdyl2
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)-V2r-Prare2
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28-Mhl
symmetry Space Group: P 61 2 2
R_factor 0.216 R_Free 0.251
crystal
cell
length a length b length c angle alpha angle beta angle gamma
60.358 60.358 89.896 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.00 Å
ligand SO4, UNX enzyme
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (29 Kb) [Save to disk]
  • Biological Unit Coordinates (4hae.pdb1.gz) 47 Kb
  • LPC: Ligand-Protein Contacts for 4HAE
  • CSU: Contacts of Structural Units for 4HAE
  • Structure Factors (1070 Kb)
  • Retrieve 4HAE in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4HAE from S2C, [Save to disk]
  • Re-refined 4hae structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4HAE in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4HAE
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4HAE, from MSDmotif at EBI
  • Fold representative 4hae from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4hae_A] [4hae]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4HAE: [CHROMO ] by SMART
  • Other resources with information on 4HAE
  • Community annotation for 4HAE at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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