4HC4 Transferase date Sep 28, 2012
title Human Hmt1 Hnrnp Methyltransferase-Like Protein 6 (S. Cerevi
authors A.Dong, H.Zeng, H.He, M.El Bakkouri, C.Bountra, C.H.Arrowsmith, A.M.Edwards, P.J.Brown, H.Wu, Structural Genomics Consortium (
compound source
Molecule: Protein Arginine N-Methyltransferase 6
Chain: A
Synonym: Heterogeneous Nuclear Ribonucleoprotein Methyltran Like Protein 6, Histone-Arginine N-Methyltransferase Prmt6;
Ec: 2.1.1.-, 2.1.1.125
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Prmt6, Hrmt1l6
Expression_system: Unidentified Baculovirus
Expression_system_taxid: 10469
Expression_system_vector_type: Plasmid
symmetry Space Group: I 41
R_factor 0.188 R_Free 0.220
crystal
cell
length a length b length c angle alpha angle beta angle gamma
93.981 93.981 108.878 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.97 Å
ligand EDO, GOL, SAH enzyme Transferase E.C.2.1.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A
  • histone methyltransferase ac...


  • Primary referenceStructural basis of arginine asymmetrical dimethylation by PRMT6., Wu H, Zheng W, Eram MS, Vhuiyan M, Dong A, Zeng H, He H, Brown P, Frankel A, Vedadi M, Luo M, Min J, Biochem J. 2016 Oct 1;473(19):3049-63. doi: 10.1042/BCJ20160537. Epub 2016 Aug 1. PMID:27480107
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (65 Kb) [Save to disk]
  • Biological Unit Coordinates (4hc4.pdb1.gz) 118 Kb
  • LPC: Ligand-Protein Contacts for 4HC4
  • CSU: Contacts of Structural Units for 4HC4
  • Structure Factors (1441 Kb)
  • Retrieve 4HC4 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4HC4 from S2C, [Save to disk]
  • Re-refined 4hc4 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4HC4 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4HC4
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4HC4, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1f4hc4, region C:731-1023 [Jmol] [rasmolscript] [script source]
  • Fold representative 4hc4 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4hc4] [4hc4_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4HC4
  • Community annotation for 4HC4 at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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