4HC9 DNA binding by GATA transcription factor-complex 3 date 2012-09-28
authors Chen, Y., Bates, D.L., Dey, R., Chen, L.
compound source
symmetry
R_factor
R_Free 0.2162
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.60
ligand ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceDNA Binding by GATA Transcription Factor Suggests Mechanisms of DNA Looping and Long-Range Gene Regulation., Chen Y, Bates DL, Dey R, Chen PH, Machado AC, Laird-Offringa IA, Rohs R, Chen L, Cell Rep. 2012 Nov 29;2(5):1197-206. doi: 10.1016/j.celrep.2012.10.012. Epub 2012, Nov 8. PMID:23142663
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (44 Kb) [Save to disk]
  • Biological Unit Coordinates (4hc9.pdb1.gz) 39 Kb
  • Biological Unit Coordinates (4hc9.pdb2.gz) 39 Kb
  • LPC: Ligand-Protein Contacts for 4HC9
  • CSU: Contacts of Structural Units for 4HC9
  • Structure Factors (494 Kb)
  • Retrieve 4HC9 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4HC9 from S2C, [Save to disk]
  • Re-refined 4hc9 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4HC9 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4HC9
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4HC9, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4hc9_A] [4hc9] [4hc9_Y] [4hc9_Z]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4HC9: [ZnF_GATA ] by SMART
  • Other resources with information on 4HC9
  • Community annotation for 4HC9 at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science