4HGT Transferase Transferase Inhibitor date Oct 08, 2012
title Crystal Structure Of Ck1d With Compound 13
authors X.Huang
compound source
Molecule: Casein Kinase I Isoform Delta
Chain: A, B
Synonym: Cki-Delta, Ckid, Tau-Protein Kinase Csnk1d
Ec: 2.7.11.1, 2.7.11.26
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Csnk1d, Hckid
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1 21 1
R_factor 0.240 R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
49.170 72.970 89.330 90.00 103.63 90.00
method X-Ray Diffractionresolution 1.80 Å
ligand 15G BindingDB enzyme Transferase E.C.2.7.11.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructure-Based Design of Potent and Selective CK1gamma Inhibitors., Huang H, Acquaviva L, Berry V, Bregman H, Chakka N, O'Connor A, DiMauro EF, Dovey J, Epstein O, Grubinska B, Goldstein J, Gunaydin H, Hua Z, Huang X, Huang L, Human J, Long A, Newcomb J, Patel VF, Saffran D, Serafino R, Schneider S, Strathdee C, Tang J, Turci S, White R, Yu V, Zhao H, Wilson C, Martin MW, ACS Med Chem Lett. 2012 Oct 18;3(12):1059-64. doi: 10.1021/ml300278f. eCollection, 2012 Dec 13. PMID:24900428
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (108 Kb) [Save to disk]
  • Biological Unit Coordinates (4hgt.pdb1.gz) 53 Kb
  • Biological Unit Coordinates (4hgt.pdb2.gz) 53 Kb
  • LPC: Ligand-Protein Contacts for 4HGT
  • CSU: Contacts of Structural Units for 4HGT
  • Structure Factors (1058 Kb)
  • Retrieve 4HGT in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4HGT from S2C, [Save to disk]
  • Re-refined 4hgt structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4HGT in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4HGT
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4HGT, from MSDmotif at EBI
  • Fold representative 4hgt from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4hgt_A] [4hgt] [4hgt_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4HGT: [STYKc ] by SMART
  • Other resources with information on 4HGT
  • Community annotation for 4HGT at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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