4HM9 Protein Transport date Oct 18, 2012
title Crystal Structure Of Full-Length Human Catenin-Beta-Like 1
authors Z.Du, X.Huang, G.Wang, Y.Wu
compound source
Molecule: Beta-Catenin-Like Protein 1
Chain: A
Synonym: Nuclear-Associated Protein, Nap, Testis Developmen Nyd-Sp19;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: C20orf33, Ctnnbl1, Pp8304
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet48b
symmetry Space Group: P 21 21 21
R_factor 0.174 R_Free 0.225
length a length b length c angle alpha angle beta angle gamma
48.990 116.360 137.400 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.10 Å

Primary referenceThe structure of full-length human CTNNBL1 reveals a distinct member of the armadillo-repeat protein family., Huang X, Wang G, Wu Y, Du Z, Acta Crystallogr D Biol Crystallogr. 2013 Aug;69(Pt 8):1598-608. doi:, 10.1107/S0907444913011360. Epub 2013 Jul 20. PMID:23897482
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (87 Kb) [Save to disk]
  • Biological Unit Coordinates (4hm9.pdb1.gz) 83 Kb
  • CSU: Contacts of Structural Units for 4HM9
  • Structure Factors (184 Kb)
  • Retrieve 4HM9 in mmCIF format [Save to disk]
  • Re-refined 4hm9 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4HM9 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4HM9
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4HM9, from MSDmotif at EBI
  • Fold representative 4hm9 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4hm9] [4hm9_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4HM9: [DUF1716 ] by SMART
  • Other resources with information on 4HM9
  • Community annotation for 4HM9 at PDBWiki (http://pdbwiki.org)

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