4HMY Structural basis for recruitment and activation of the AP-1 clathrin adaptor complex by Arf1 date 2012-10-18
authors Ren, X., Farias, G.G., Canagarajah, B.J., Bonifacino, J.S., Hurley, J.H.
compound source
symmetry
R_factor
R_Free 0.25
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 7.00
ligand GTP, MG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


B


C
  • phospholipase D activator ac...


    • M


    S


    Primary referenceStructural Basis for Recruitment and Activation of the AP-1 Clathrin Adaptor Complex by Arf1., Ren X, Farias GG, Canagarajah BJ, Bonifacino JS, Hurley JH, Cell. 2013 Feb 14;152(4):755-67. doi: 10.1016/j.cell.2012.12.042. PMID:23415225
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (254 Kb) [Save to disk]
  • Biological Unit Coordinates (4hmy.pdb1.gz) 247 Kb
  • LPC: Ligand-Protein Contacts for 4HMY
  • CSU: Contacts of Structural Units for 4HMY
  • Structure Factors (122 Kb)
  • Retrieve 4HMY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4HMY from S2C, [Save to disk]
  • Re-refined 4hmy structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4HMY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4HMY
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4HMY, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4hmy_A] [4hmy] [4hmy_C] [4hmy_S] [4hmy_B] [4hmy_M]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4HMY: [ARF ] by SMART
    • Other resources with information on 4HMY
  • Community annotation for 4HMY at PDBWiki (http://pdbwiki.org)

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