4HNF Transferase Transferase Inhibitor date Oct 19, 2012
title Crystal Structure Of Ck1d In Complex With Pf4800567
authors X.Huang, A.M.Long, H.Zhao
compound source
Molecule: Casein Kinase I Isoform Delta
Chain: A, B
Synonym: Cki-Delta, Ckid, Tau-Protein Kinase Csnk1d
Ec: 2.7.11.1, 2.7.11.26
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Csnk1d, Hckid
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: C 1 2 1
R_factor 0.241 R_Free 0.274
crystal
cell
length a length b length c angle alpha angle beta angle gamma
171.217 48.109 80.467 90.00 110.67 90.00
method X-Ray Diffractionresolution 2.07 Å
ligand 16W BindingDB enzyme Transferase E.C.2.7.11.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructural Basis for the Potent and Selective Inhibition of Casein Kinase 1 Epsilon., Long AM, Zhao H, Huang X, J Med Chem. 2012 Nov 9. PMID:23106386
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (107 Kb) [Save to disk]
  • Biological Unit Coordinates (4hnf.pdb1.gz) 52 Kb
  • Biological Unit Coordinates (4hnf.pdb2.gz) 52 Kb
  • Biological Unit Coordinates (4hnf.pdb3.gz) 101 Kb
  • LPC: Ligand-Protein Contacts for 4HNF
  • CSU: Contacts of Structural Units for 4HNF
  • Structure Factors (810 Kb)
  • Retrieve 4HNF in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4HNF from S2C, [Save to disk]
  • Re-refined 4hnf structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4HNF in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4HNF
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4HNF, from MSDmotif at EBI
  • Fold representative 4hnf from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4hnf] [4hnf_A] [4hnf_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4HNF: [STYKc ] by SMART
  • Other resources with information on 4HNF
  • Community annotation for 4HNF at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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