4HNM Protein Transport date Oct 19, 2012
title Crystal Structure Of Human Catenin-Beta-Like 1 56 Kda Fragme
authors Z.Du, X.Huang, G.Wang, Y.Wu
compound source
Molecule: Beta-Catenin-Like Protein 1
Chain: A
Synonym: Nuclear-Associated Protein, Nap, Testis Developmen Nyd-Sp19;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: C20orf33, Ctnnbl1, Pp8304
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet48b
symmetry Space Group: P 41 21 2
R_factor 0.207 R_Free 0.258
length a length b length c angle alpha angle beta angle gamma
94.970 94.970 172.780 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.90 Å
ligand MSE enzyme
Primary referenceThe structure of full-length human CTNNBL1 reveals a distinct member of the armadillo-repeat protein family., Huang X, Wang G, Wu Y, Du Z, Acta Crystallogr D Biol Crystallogr. 2013 Aug;69(Pt 8):1598-608. doi:, 10.1107/S0907444913011360. Epub 2013 Jul 20. PMID:23897482
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (85 Kb) [Save to disk]
  • Biological Unit Coordinates (4hnm.pdb1.gz) 80 Kb
  • LPC: Ligand-Protein Contacts for 4HNM
  • CSU: Contacts of Structural Units for 4HNM
  • Structure Factors (663 Kb)
  • Retrieve 4HNM in mmCIF format [Save to disk]
  • Re-refined 4hnm structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4HNM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4HNM
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4HNM, from MSDmotif at EBI
  • Fold representative 4hnm from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4hnm_A] [4hnm]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4HNM: [DUF1716 ] by SMART
  • Other resources with information on 4HNM
  • Community annotation for 4HNM at PDBWiki (http://pdbwiki.org)

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