4HSG Transferase Transferase Inhibitor date Oct 30, 2012
title Crystal Structure Of Human Prmt3 In Complex With An Alloster Inhibitor (Prmt3- Ktd)
authors E.Dobrovetsky, A.Dong, F.Liu, F.Li, W.Tempel, A.Siarheyeva, T.Haji D.Smil, C.Bountra, C.H.Arrowsmith, A.M.Edwards, P.J.Brown, M.Sch J.Jin, M.Vedadi, Structural Genomics Consortium (Sgc)
compound source
Molecule: Prmt3 Protein
Chain: A
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Prmt3
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)-V2r-Prar2
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28-Lic
symmetry Space Group: P 43 21 2
R_factor 0.192 R_Free 0.221
crystal
cell
length a length b length c angle alpha angle beta angle gamma
70.699 70.699 172.946 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.30 Å
ligand KTD, UNX enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceExploiting an allosteric binding site of PRMT3 yields potent and selective inhibitors., Liu F, Li F, Ma A, Dobrovetsky E, Dong A, Gao C, Korboukh I, Liu J, Smil D, Brown PJ, Frye SV, Arrowsmith CH, Schapira M, Vedadi M, Jin J, J Med Chem. 2013 Mar 14;56(5):2110-24. doi: 10.1021/jm3018332. Epub 2013 Feb 27. PMID:23445220
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (56 Kb) [Save to disk]
  • Biological Unit Coordinates (4hsg.pdb1.gz) 101 Kb
  • LPC: Ligand-Protein Contacts for 4HSG
  • CSU: Contacts of Structural Units for 4HSG
  • Structure Factors (743 Kb)
  • Retrieve 4HSG in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4HSG from S2C, [Save to disk]
  • Re-refined 4hsg structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4HSG in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4HSG
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4HSG, from MSDmotif at EBI
  • Fold representative 4hsg from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4hsg] [4hsg_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4HSG
  • Community annotation for 4HSG at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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