4HT1 Immune System date Oct 31, 2012
title Human Tweak In Complex With The Fab Fragment Of A Neutralizi Antibody
authors A.Lammens
compound source
Molecule: Tumor Necrosis Factor Ligand Superfamily Member 1
Chain: T
Synonym: Apo3 Ligand, Tnf-Related Weak Inducer Of Apoptosis Tumor Necrosis Factor Ligand Superfamily Member 12, Membran Tumor Necrosis Factor Ligand Superfamily Member 12, Secrete
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Chimeric Antibody Fab
Chain: H

Organism_scientific: Oryctolagus Cuniculus
Organism_taxid: 9986
Other_details: Chimeric Antibody

Molecule: Chimeric Antibody Fab
Chain: L

Organism_scientific: Oryctolagus Cuniculus
Organism_taxid: 9986
Other_details: Chimeric Antibody
symmetry Space Group: P 3
R_factor 0.183 R_Free 0.211
crystal
cell
length a length b length c angle alpha angle beta angle gamma
101.630 101.630 57.582 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.50 Å
Gene
Ontology
ChainFunctionProcessComponent
T


Primary referenceCrystal Structure of Human TWEAK in Complex with the Fab Fragment of a Neutralizing Antibody Reveals Insights into Receptor Binding., Lammens A, Baehner M, Kohnert U, Niewoehner J, von Proff L, Schraeml M, Lammens K, Hopfner KP, PLoS One. 2013 May 8;8(5):e62697. doi: 10.1371/journal.pone.0062697. Print 2013. PMID:23667509
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (93 Kb) [Save to disk]
  • Biological Unit Coordinates (4ht1.pdb1.gz) 262 Kb
  • CSU: Contacts of Structural Units for 4HT1
  • Structure Factors (141 Kb)
  • Retrieve 4HT1 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4HT1 from S2C, [Save to disk]
  • Re-refined 4ht1 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4HT1 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4HT1
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4HT1, from MSDmotif at EBI
  • Fold representative 4ht1 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4ht1_H] [4ht1] [4ht1_L] [4ht1_T]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4HT1: [IG_like] [IGv] [TNF ] by SMART
  • Other resources with information on 4HT1
  • Community annotation for 4HT1 at PDBWiki (http://pdbwiki.org)

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