4IIM Endocytosis date Dec 20, 2012
title Crystal Structure Of The Second Sh3 Domain Of Itsn1 Bound Wi Synthetic Peptide
authors A.Dong, X.Guan, H.Huang, A.Wernimont, J.Gu, S.Sidhu, C.Bountra, C.H.Arrowsmith, A.M.Edwards, Y.Tong, Structural Genomics Conso (Sgc)
compound source
Molecule: Intersectin-1
Chain: A, B
Synonym: Sh3 Domain-Containing Protein 1a, Sh3p17
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Itsn1, Itsn, Sh3d1a
Expression_system: Escherichia Coli
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Phh0239

Molecule: Peptide Ligand
Chain: C, D, E
Engineered: Yes

Synthetic: Yes
Other_details: Synthetic Sequence
symmetry Space Group: P 21 21 21
R_factor 0.188 R_Free 0.243
length a length b length c angle alpha angle beta angle gamma
41.048 51.393 69.260 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.80 Å
ligand UNX enzyme
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (32 Kb) [Save to disk]
  • Biological Unit Coordinates (4iim.pdb1.gz) 27 Kb
  • Biological Unit Coordinates (4iim.pdb2.gz) 27 Kb
  • LPC: Ligand-Protein Contacts for 4IIM
  • CSU: Contacts of Structural Units for 4IIM
  • Structure Factors (569 Kb)
  • Retrieve 4IIM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4IIM from S2C, [Save to disk]
  • Re-refined 4iim structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4IIM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4IIM
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4IIM, from MSDmotif at EBI
  • Fold representative 4iim from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4iim_C] [4iim_A] [4iim_E] [4iim_D] [4iim_B] [4iim]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4IIM: [SH3 ] by SMART
  • Other resources with information on 4IIM
  • Community annotation for 4IIM at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science