4IKP Transferase date Dec 27, 2012
title Crystal Structure Of Coactivator-Associated Arginine Methylt With Methylenesinefungin
authors A.Dong, L.Dombrovski, H.He, G.Ibanez, A.Wernimont, W.Zheng, C.Boun C.H.Arrowsmith, A.M.Edwards, P.J.Brown, J.Min, M.Luo, H.Wu, Struc Genomics Consortium (Sgc)
compound source
Molecule: Histone-Arginine Methyltransferase Carm1
Chain: A, B, C, D
Fragment: Unp Residues 140-480
Synonym: Coactivator-Associated Arginine Methyltransferase Arginine N-Methyltransferase 4;
Ec: 2.1.1.-, 2.1.1.125
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Carm1, Prmt4
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
symmetry Space Group: P 21 21 2
R_factor 0.203 R_Free 0.231
crystal
cell
length a length b length c angle alpha angle beta angle gamma
75.060 98.844 206.628 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand 4IK, GOL, UNX enzyme Transferase E.C.2.1.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (241 Kb) [Save to disk]
  • Biological Unit Coordinates (4ikp.pdb1.gz) 120 Kb
  • Biological Unit Coordinates (4ikp.pdb2.gz) 119 Kb
  • LPC: Ligand-Protein Contacts for 4IKP
  • CSU: Contacts of Structural Units for 4IKP
  • Structure Factors (1483 Kb)
  • Retrieve 4IKP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4IKP from S2C, [Save to disk]
  • Re-refined 4ikp structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4IKP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4IKP
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4IKP, from MSDmotif at EBI
  • Fold representative 4ikp from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4ikp_D] [4ikp_A] [4ikp] [4ikp_B] [4ikp_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4IKP
  • Community annotation for 4IKP at PDBWiki (http://pdbwiki.org)

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