4IM2 Transferase Transferase Inhibitor date Jan 01, 2013
title Structure Of Tank-Binding Kinase 1
authors D.Tu, M.J.Eck
compound source
Molecule: Serinethreonine-Protein Kinase Tbk1
Chain: A
Fragment: Residues 1 To 657
Synonym: Nf-Kappa-B-Activating Kinase, T2k, Tank-Binding Ki
Ec: 2.7.11.1
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Tbk1, Nak
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108
symmetry Space Group: P 32 2 1
R_factor 0.197 R_Free 0.255
crystal
cell
length a length b length c angle alpha angle beta angle gamma
133.924 133.924 85.559 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.50 Å
ligand BX7, CL enzyme Transferase E.C.2.7.11.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (229 Kb) [Save to disk]
  • Biological Unit Coordinates (4im2.pdb1.gz) 441 Kb
  • Biological Unit Coordinates (4im2.pdb2.gz) 222 Kb
  • LPC: Ligand-Protein Contacts for 4IM2
  • CSU: Contacts of Structural Units for 4IM2
  • Structure Factors (219 Kb)
  • Retrieve 4IM2 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4IM2 from S2C, [Save to disk]
  • Re-refined 4im2 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4IM2 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4IM2
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4IM2, from MSDmotif at EBI
  • Fold representative 4im2 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4im2_A] [4im2]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4IM2: [STYKc ] by SMART
  • Other resources with information on 4IM2
  • Community annotation for 4IM2 at PDBWiki (http://pdbwiki.org)

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