4IRV Structure of the Helicobacter pylori CagA Oncogene Bound to the Human Tumor Suppressor Apoptosis-stimulating Protein of p53-2 date 2013-01-15
authors Stebbins, C.E., Nesic, D.
compound source
symmetry
R_factor
R_Free 0.23410
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.04
ligand MSE enzyme
Gene HP
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceStructure of the Helicobacter pylori CagA oncoprotein bound to the human tumor suppressor ASPP2., Nesic D, Buti L, Lu X, Stebbins CE, Proc Natl Acad Sci U S A. 2014 Jan 28;111(4):1562-7. doi:, 10.1073/pnas.1320631111. Epub 2014 Jan 13. PMID:24474782
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (160 Kb) [Save to disk]
  • Biological Unit Coordinates (4irv.pdb1.gz) 40 Kb
  • Biological Unit Coordinates (4irv.pdb2.gz) 40 Kb
  • Biological Unit Coordinates (4irv.pdb3.gz) 39 Kb
  • Biological Unit Coordinates (4irv.pdb4.gz) 40 Kb
  • LPC: Ligand-Protein Contacts for 4IRV
  • CSU: Contacts of Structural Units for 4IRV
  • Structure Factors (912 Kb)
  • Retrieve 4IRV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4IRV from S2C, [Save to disk]
  • Re-refined 4irv structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4IRV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4IRV
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4IRV, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4irv_B] [4irv_H] [4irv_E] [4irv] [4irv_F] [4irv_C] [4irv_D] [4irv_G] [4irv_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4IRV
  • Community annotation for 4IRV at PDBWiki (http://pdbwiki.org)

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