4JJQ Crystal structure of usp7-ntd with an e2 enzyme date
authors Saridakis, V.
compound source
symmetry
R_factor
R_Free 0.217
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.95
Primary referenceUbiquitin-specific protease 7 is a regulator of ubiquitin-conjugating enzyme UbE2E1., Sarkari F, Wheaton K, La Delfa A, Mohamed M, Shaikh F, Khatun R, Arrowsmith CH, Frappier L, Saridakis V, Sheng Y, J Biol Chem. 2013 Jun 7;288(23):16975-85. doi: 10.1074/jbc.M113.469262. Epub 2013, Apr 19. PMID:23603909
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (29 Kb) [Save to disk]
  • Biological Unit Coordinates (4jjq.pdb1.gz) 25 Kb
  • CSU: Contacts of Structural Units for 4JJQ
  • Structure Factors (113 Kb)
  • Retrieve 4JJQ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4JJQ from S2C, [Save to disk]
  • Re-refined 4jjq structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4JJQ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4JJQ
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4JJQ, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4jjq_B] [4jjq_A] [4jjq]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4JJQ: [MATH ] by SMART
    • Other resources with information on 4JJQ
  • Community annotation for 4JJQ at PDBWiki (http://pdbwiki.org)

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