4JLU Antitumor Protein Signaling Protein date Mar 13, 2013
title Crystal Structure Of Brca1 Brct With Doubly Phosphorylated A
authors D.Badgujar, A.K.Varma
compound source
Molecule: Breast Cancer Type 1 Susceptibility Protein
Chain: A
Fragment: Unp Residues 1649-1859
Synonym: Ring Finger Protein 53
Ec: 6.3.2.-
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Brca1, Rnf53
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Pgex-Kt

Molecule: Brca1-A Complex Subunit Abraxas
Chain: B
Fragment: Unp Residues 399-409
Synonym: Coiled-Coil Domain-Containing Protein 98, Protein
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Other_details: The Peptide Was Chemically Synthesized.
symmetry Space Group: P 61 2 2
R_factor 0.298 R_Free 0.327
crystal
cell
length a length b length c angle alpha angle beta angle gamma
113.599 113.599 121.610 90.00 90.00 120.00
method X-Ray Diffractionresolution 3.50 Å
ligand SEP enzyme Ligase E.C.6.3.2 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (37 Kb) [Save to disk]
  • Biological Unit Coordinates (4jlu.pdb1.gz) 32 Kb
  • LPC: Ligand-Protein Contacts for 4JLU
  • CSU: Contacts of Structural Units for 4JLU
  • Structure Factors (91 Kb)
  • Retrieve 4JLU in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4JLU from S2C, [Save to disk]
  • Re-refined 4jlu structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4JLU in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4JLU
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4JLU, from MSDmotif at EBI
  • Fold representative 4jlu from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4jlu_A] [4jlu_B] [4jlu]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4JLU: [BRCT ] by SMART
  • Other resources with information on 4JLU
  • Community annotation for 4JLU at PDBWiki (http://pdbwiki.org)

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