4JS0 Signaling Protein Signaling Protein date Mar 22, 2013
title Complex Of Cdc42 With The Crib-Pr Domain Of Irsp53
authors D.J.Kast, R.Dominguez
compound source
Molecule: Cell Division Control Protein 42 Homolog
Chain: A
Synonym: G25k Gtp-Binding Protein
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Cdc42
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Ptyb11

Molecule: Brain-Specific Angiogenesis Inhibitor 1-Associate 2;
Chain: B
Fragment: Crib-Pr Domain
Synonym: Bai-Associated Protein 2, Bai1-Associated Protein Bap2, Fas Ligand-Associated Factor 3, Flaf3, Insulin Recept Substrate P53p58, Irs-58, Irsp5358, Insulin Receptor Subs Protein Of 53 Kda, Irsp53, Insulin Receptor Substrate P53;
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: P 42 21 2
R_factor 0.146 R_Free 0.199
length a length b length c angle alpha angle beta angle gamma
67.230 67.230 79.750 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.90 Å
ligand GNP, MG, PE4 enzyme
  • ubiquitin protein ligase act...

  • B

    Primary referenceMechanism of IRSp53 inhibition and combinatorial activation by Cdc42 and downstream effectors., Kast DJ, Yang C, Disanza A, Boczkowska M, Madasu Y, Scita G, Svitkina T, Dominguez R, Nat Struct Mol Biol. 2014 Mar 2. doi: 10.1038/nsmb.2781. PMID:24584464
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (112 Kb) [Save to disk]
  • Biological Unit Coordinates (4js0.pdb1.gz) 105 Kb
  • LPC: Ligand-Protein Contacts for 4JS0
  • CSU: Contacts of Structural Units for 4JS0
  • Structure Factors (107 Kb)
  • Retrieve 4JS0 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4JS0 from S2C, [Save to disk]
  • Re-refined 4js0 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4JS0 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4JS0
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4JS0, from MSDmotif at EBI
  • Fold representative 4js0 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4js0_A] [4js0] [4js0_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4JS0: [RHO ] by SMART
  • Other resources with information on 4JS0
  • Community annotation for 4JS0 at PDBWiki (http://pdbwiki.org)

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