4JZJ Cytokine Receptor Immune System date Apr 03, 2013
title Crystal Structure Of Receptor-Fab Complex
authors S.E.Broughton, M.W.Parker
compound source
Molecule: Interleukin-3 Receptor Subunit Alpha
Chain: C, D
Fragment: Domain 2, Domain 3, Unp Residues 20-307
Synonym: Il-3 Receptor Subunit Alpha, Il-3r Subunit Alpha, Alpha, Il-3ra;
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Il3ra
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_cell_line: Sf9
Expression_system_vector_type: Baculovirus
Expression_system_plasmid: Pfastbac1

Molecule: Fab Heavy Chain
Chain: A, H

Organism_scientific: Mus Musculus
Organism_common: Mouse
Organism_taxid: 10090
Other_details: The Fab Fragment Was Prepared By Papain Dige Mab And Protein A Removal Of Undigested Immunoglobulin And Fragment.;

Molecule: Fab Light Chain
Chain: B, L

Organism_scientific: Mus Musculus
Organism_common: Mouse
Organism_taxid: 10090
Other_details: The Fab Fragment Was Prepared By Papain Dige Mab And Protein A Removal Of Undigested Immunoglobulin And Fragment.
symmetry Space Group: P 1 21 1
R_factor 0.185 R_Free 0.244
crystal
cell
length a length b length c angle alpha angle beta angle gamma
88.300 120.648 92.968 90.00 97.45 90.00
method X-Ray Diffractionresolution 2.80 Å
ligand BMA, FUC, FUL, GOL, MAN, NAG enzyme
Gene
Ontology
ChainFunctionProcessComponent
D, C


Primary referenceDual mechanism of interleukin-3 receptor blockade by an anti-cancer antibody., Broughton SE, Hercus TR, Hardy MP, McClure BJ, Nero TL, Dottore M, Huynh H, Braley H, Barry EF, Kan WL, Dhagat U, Scotney P, Hartman D, Busfield SJ, Owczarek CM, Nash AD, Wilson NJ, Parker MW, Lopez AF, Cell Rep. 2014 Jul 24;8(2):410-9. doi: 10.1016/j.celrep.2014.06.038. Epub 2014, Jul 17. PMID:25043189
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (459 Kb) [Save to disk]
  • Biological Unit Coordinates (4jzj.pdb1.gz) 449 Kb
  • LPC: Ligand-Protein Contacts for 4JZJ
  • CSU: Contacts of Structural Units for 4JZJ
  • Structure Factors (1057 Kb)
  • Retrieve 4JZJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4JZJ from S2C, [Save to disk]
  • Re-refined 4jzj structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4JZJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4JZJ
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4JZJ, from MSDmotif at EBI
  • Fold representative 4jzj from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4jzj] [4jzj_H] [4jzj_B] [4jzj_L] [4jzj_D] [4jzj_C] [4jzj_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4JZJ: [IG_like] [IGv ] by SMART
  • Other resources with information on 4JZJ
  • Community annotation for 4JZJ at PDBWiki (http://pdbwiki.org)

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