4L0D Crystal structure of delta516-525 human cystathionine beta-synthase containing C-terminal 6xHis-tag date 2013-05-31
authors Ereno, J., Majtan, T., Oyenarte, I., Kraus, J.P., Martinez-Cruz, L.A.
compound source
symmetry
R_factor
R_Free 0.2839
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.97
ligand HEM, PLP enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • nitrite reductase (NO-formin...


    • Primary referenceStructural basis of regulation and oligomerization of human cystathionine beta-synthase, the central enzyme of transsulfuration., Ereno-Orbea J, Majtan T, Oyenarte I, Kraus JP, Martinez-Cruz LA, Proc Natl Acad Sci U S A. 2013 Sep 16. PMID:24043838
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (162 Kb) [Save to disk]
  • Biological Unit Coordinates (4l0d.pdb1.gz) 155 Kb
  • LPC: Ligand-Protein Contacts for 4L0D
  • CSU: Contacts of Structural Units for 4L0D
  • Structure Factors (1062 Kb)
  • Retrieve 4L0D in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4L0D from S2C, [Save to disk]
  • Re-refined 4l0d structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4L0D in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4L0D
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4L0D, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4l0d] [4l0d_B] [4l0d_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4L0D: [CBS ] by SMART
    • Other resources with information on 4L0D
  • Community annotation for 4L0D at PDBWiki (http://pdbwiki.org)

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