4M16 Cell Adhesion date Aug 02, 2013
title Crystal Structure Of The N-Terminal Fic Domain Of Bartonella Protein (Bep); Substrate Of Virb T4ss (Virb-Translocated Be Protein) From Bartonella Sp. Ar 15-3
authors Seattle Structural Genomics Center For Infectious Disease (S
compound source
Molecule: Bartonella Effector Protein (Bep) Substrate Of Vi
Chain: A
Fragment: Unp Residues 9-240
Engineered: Yes
Organism_scientific: Bartonella Sp. Ar 15-3
Organism_taxid: 545617
Gene: Bar15_120228
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1 21 1
R_factor 0.164 R_Free 0.211
length a length b length c angle alpha angle beta angle gamma
40.240 47.480 67.970 90.00 105.64 90.00
method X-Ray Diffractionresolution 1.85 Å
ligand EDO enzyme
Gene BAR15
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (86 Kb) [Save to disk]
  • Biological Unit Coordinates (4m16.pdb1.gz) 81 Kb
  • LPC: Ligand-Protein Contacts for 4M16
  • CSU: Contacts of Structural Units for 4M16
  • Structure Factors (298 Kb)
  • Retrieve 4M16 in mmCIF format [Save to disk]
  • Re-refined 4m16 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4M16 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4M16
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4M16, from MSDmotif at EBI
  • Fold representative 4m16 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4m16] [4m16_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4M16
  • Community annotation for 4M16 at PDBWiki (http://pdbwiki.org)

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