OCA Atlas for 4M8D

4M8D

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

23J, CA, MN

enzyme

Gene

SIAM614

Gene
Ontology

Chain	Function	Process	Component
A, H, F, E, D, B, K, C, G, L, J, I

Primary reference

A proton wire and water channel revealed in the crystal structure of isatin hydrolase., Bjerregaard-Andersen K, Sommer T, Jensen JK, Jochimsen B, Etzerodt M, Morth JP, J Biol Chem. 2014 Jun 10. pii: jbc.M114.568824. PMID:24917679

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1037 Kb) [Save to disk]

Biological Unit Coordinates (4m8d.pdb1.gz) 179 Kb

Biological Unit Coordinates (4m8d.pdb2.gz) 178 Kb

Biological Unit Coordinates (4m8d.pdb3.gz) 178 Kb

Biological Unit Coordinates (4m8d.pdb4.gz) 176 Kb

Biological Unit Coordinates (4m8d.pdb5.gz) 177 Kb

Biological Unit Coordinates (4m8d.pdb6.gz) 176 Kb

LPC: Ligand-Protein Contacts for 4M8D

CSU: Contacts of Structural Units for 4M8D

Structure Factors (4029 Kb)

Retrieve 4M8D in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 4M8D from S2C, [Save to disk]

Re-refined 4m8d structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4M8D in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4m8d] [4m8d_A] [4m8d_B] [4m8d_C] [4m8d_D] [4m8d_E] [4m8d_F] [4m8d_G] [4m8d_H] [4m8d_I] [4m8d_J] [4m8d_K] [4m8d_L]

SWISS-PROT database:

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