4MJS Transferase Protein Binding date Sep 04, 2013
title Crystal Structure Of A Pb1 Complex
authors J.Ren, Z.X.Wang, J.W.Wu
compound source
Molecule: Protein Kinase C Zeta Type
Chain: A, C, E, G, I, K, M, O, Q, S, U, W
Fragment: Pb1 Domain, Unp Residues 15-101
Synonym: Npkc-Zeta
Ec: 2.7.11.13
Engineered: Yes
Organism_scientific: Rattus Norvegicus
Organism_common: Brown Rat,Rat,Rats
Organism_taxid: 10116
Gene: Pkcz, Prkcz
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex4t2

Molecule: Sequestosome-1
Chain: B, D, F, H, J, L, N, P, R, T, V, X
Fragment: Pb1 Domain, Unp Residues 3-102
Synonym: Ebi3-Associated Protein Of 60 Kda, Ebiap, P60, Phosphotyrosine-Independent Ligand For The Lck Sh2 Domain O Ubiquitin-Binding Protein P62;
Engineered: Yes
Mutation: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Orca, Osil, Sqstm1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pacycduet
symmetry Space Group: P 21 21 21
R_factor 0.238 R_Free 0.287
crystal
cell
length a length b length c angle alpha angle beta angle gamma
85.715 135.681 259.559 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.50 Å
ligand EDO enzyme Transferase E.C.2.7.11.13 BRENDA
Primary referenceStructural and biochemical insights into the homotypic PB1-PB1 complex between PKCzeta and p62., Ren J, Wang J, Wang Z, Wu J, Sci China Life Sci. 2014 Jan;57(1):69-80. doi: 10.1007/s11427-013-4592-z. Epub, 2013 Dec 26. PMID:24369353
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (348 Kb) [Save to disk]
  • Biological Unit Coordinates (4mjs.pdb1.gz) 32 Kb
  • Biological Unit Coordinates (4mjs.pdb2.gz) 33 Kb
  • Biological Unit Coordinates (4mjs.pdb3.gz) 33 Kb
  • Biological Unit Coordinates (4mjs.pdb4.gz) 33 Kb
  • Biological Unit Coordinates (4mjs.pdb5.gz) 33 Kb
  • Biological Unit Coordinates (4mjs.pdb6.gz) 33 Kb
  • Biological Unit Coordinates (4mjs.pdb7.gz) 33 Kb
  • Biological Unit Coordinates (4mjs.pdb8.gz) 32 Kb
  • Biological Unit Coordinates (4mjs.pdb9.gz) 33 Kb
  • LPC: Ligand-Protein Contacts for 4MJS
  • CSU: Contacts of Structural Units for 4MJS
  • Structure Factors (1545 Kb)
  • Retrieve 4MJS in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4MJS from S2C, [Save to disk]
  • Re-refined 4mjs structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4MJS in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4MJS
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4MJS, from MSDmotif at EBI
  • Fold representative 4mjs from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4mjs_G] [4mjs_Q] [4mjs_R] [4mjs_A] [4mjs_N] [4mjs_L] [4mjs_K] [4mjs_O] [4mjs_C] [4mjs] [4mjs_E] [4mjs_B] [4mjs_U] [4mjs_V] [4mjs_P] [4mjs_I] [4mjs_T] [4mjs_M] [4mjs_F] [4mjs_H] [4mjs_J] [4mjs_S] [4mjs_D] [4mjs_W] [4mjs_X]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4MJS: [PB1 ] by SMART
  • Other resources with information on 4MJS
  • Community annotation for 4MJS at PDBWiki (http://pdbwiki.org)

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