4MXW Structure of heterotrimeric lymphotoxin LTa1b2 bound to lymphotoxin beta receptor LTbR and anti-LTa Fab date 2013-09-26
authors Sudhamsu, J., Yin, J.P., Hymowitz, S.G.
compound source
symmetry
R_factor
R_Free 0.2960
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 3.60
Gene
Ontology
ChainFunctionProcessComponent
A, X


S, R


Y, B, Z, D


Primary referenceDimerization of LTbetaR by LTalpha1beta2 is necessary and sufficient for signal transduction., Sudhamsu J, Yin J, Chiang EY, Starovasnik MA, Grogan JL, Hymowitz SG, Proc Natl Acad Sci U S A. 2013 Dec 3;110(49):19896-901. doi:, 10.1073/pnas.1310838110. Epub 2013 Nov 18. PMID:24248355
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (300 Kb) [Save to disk]
  • Biological Unit Coordinates (4mxw.pdb1.gz) 144 Kb
  • Biological Unit Coordinates (4mxw.pdb2.gz) 153 Kb
  • CSU: Contacts of Structural Units for 4MXW
  • Structure Factors (312 Kb)
  • Retrieve 4MXW in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4MXW from S2C, [Save to disk]
  • Re-refined 4mxw structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4MXW in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4MXW
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4MXW, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4mxw_Z] [4mxw_A] [4mxw_S] [4mxw_W] [4mxw_D] [4mxw_X] [4mxw_H] [4mxw_L] [4mxw_V] [4mxw] [4mxw_R] [4mxw_Y] [4mxw_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4MXW: [IG_like] [IGv] [TNF] [TNFR ] by SMART
  • Other resources with information on 4MXW
  • Community annotation for 4MXW at PDBWiki (http://pdbwiki.org)

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