4MY6 Cell Adhesion Inhibitor date Sep 27, 2013
title Enah-Evh1 In Complex With Peptidomimetic Low-Molecular Weigh Inhibitor Ac-[2-Cl-F]-[Prom-2]-[Prom-1]-Oh
authors M.Barone, Y.Roske, R.Kuehne
compound source
Molecule: Protein Enabled Homolog
Chain: A, B
Fragment: Evh1 Domain
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Enah, Mena
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21 (De3)
Expression_system_vector_type: Pgex-4t1
symmetry Space Group: C 2 2 2
R_factor 0.189 R_Free 0.238
crystal
cell
length a length b length c angle alpha angle beta angle gamma
89.830 131.420 35.560 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.70 Å
ligand 3VH, BR enzyme
Primary referenceA modular toolkit to inhibit proline-rich motif-mediated protein-protein interactions., Opitz R, Muller M, Reuter C, Barone M, Soicke A, Roske Y, Piotukh K, Huy P, Beerbaum M, Wiesner B, Beyermann M, Schmieder P, Freund C, Volkmer R, Oschkinat H, Schmalz HG, Kuhne R, Proc Natl Acad Sci U S A. 2015 Apr 6. pii: 201422054. PMID:25848013
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (46 Kb) [Save to disk]
  • Biological Unit Coordinates (4my6.pdb1.gz) 22 Kb
  • Biological Unit Coordinates (4my6.pdb2.gz) 22 Kb
  • LPC: Ligand-Protein Contacts for 4MY6
  • CSU: Contacts of Structural Units for 4MY6
  • Structure Factors (448 Kb)
  • Retrieve 4MY6 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4MY6 from S2C, [Save to disk]
  • Re-refined 4my6 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4MY6 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4MY6
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4MY6, from MSDmotif at EBI
  • Fold representative 4my6 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4my6_A] [4my6_B] [4my6]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4MY6: [RanBD] [WH1 ] by SMART
  • Other resources with information on 4MY6
  • Community annotation for 4MY6 at PDBWiki (http://pdbwiki.org)

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